Payroll basics – what happens every time you pay an employee

Once you hire an employee, paying them is not just a bank transfer.

Each pay run also involves tax, superannuation, and reporting to the ATO.

What happens every pay run

Every time you process payroll, you need to:

  • calculate wages
  • withhold PAYG tax
  • calculate superannuation

These happen at the same time — every pay cycle.

Reporting to the ATO

The pay run is also reported to the ATO through Single Touch Payroll (STP). This includes:

  • wages paid
  • tax withheld
  • super obligations

This reporting happens automatically through your payroll system.

Before your first pay run

Before you can process payroll, you need:

  • employee TFN details
  • super fund information
  • agreed pay terms

Common mistakes

Most mistakes happen at the start. Common issues include:

  • incorrect tax withheld
  • wrong super amounts calculated
  • missed reporting obligations

These issues usually come from poor setup, not complexity.

Why software matters

Using a payroll system makes this process significantly easier. Payroll software:

  • handles calculations automatically
  • processes STP reporting
  • keeps everything in one place

The choice of system affects how payroll is managed in practice day to day.

Final note

Payroll is a repeating process.

If set up correctly, it becomes routine. If not, the same errors repeat every pay cycle.